PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g13800.3
Common NameLR48_Vigan02g137300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 245aa    MW: 27389.3 Da    PI: 5.9133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g13800.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-18101150355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr+++ +g+++AeIrd + ng   r+++g+f+tae Aa a+++a+ + +g
  Vang06g13800.3 101 FRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 150
                     8*******.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.313100158IPR001471AP2/ERF domain
SMARTSM003802.4E-34100164IPR001471AP2/ERF domain
PRINTSPR003676.9E-10101112IPR001471AP2/ERF domain
PfamPF008472.5E-12101150IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21101159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-29101159IPR001471AP2/ERF domain
CDDcd000182.58E-18101159No hitNo description
PRINTSPR003676.9E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDFDSSMFQY ESLNSPFVNS SVCAETFHWE EFFLFNEENN TNIPFSFNEQ SQMKESSSSD  60
SNSSGCLVSS ESQVEVSSNL SDASEGHVVK EAQGPKEKRP FRGVRRRPWG KFAAEIRDST  120
RNGVRVWIGT FDTAEAAALA YDQAAFSTRG SMAVLNFPEE VVRESLKDMP NKPWEDGSSP  180
VLALKKKHTM RRKSKATNKK PKRDHHHGNV LSQNVLVLED LGSDYLEQLL SLTSSSSSSD  240
HVFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-27101161363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522685.11e-138PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC84e-56ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0S3SR860.0A0A0S3SR86_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TXA80.0A0A0L9TXA8_PHAAN; Uncharacterized protein
STRINGGLYMA10G04210.11e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151851013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-45ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]